SE1920207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4250
  • Lotus japonicus
  • SE1920207
  • Mutator
  • M6
  • LjSGA_028529:66-276
  • TAGTTTTAA
  • AGGGCTAATGGTCAAATTAGTCCCTGAGTTTGTAAGCGAGTTAGATTTTAGTCCATCTGAGGAAAAATAATGTTTAGTGGCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGTTTTA    C                   T   T             A           A             A               CAGAAACCACCAA
        AGGG TAATGGTCAAATTAGTCCC GAG TTGTAAGCGAGTT GATTTTAGTCC TCTGAGGAAAAAT ATGTTTAGTGGCGGT             
        |||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||             T
        TCCC ATTATCAGTTTAATCAGGG CTC AACATTCGCTTAA CTAAAATCAGG AGACTCCTTTTTA TGTAAATCGCCGTCA             
AATTTTGA    A                   C   C             A           G             C               ATAAAAATGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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