SE1930209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4252
  • Lotus japonicus
  • SE1930209
  • hAT
  • Hat11
  • LjSGA_025315:769-1147
  • CCCTAACA
  • CAGTGACGGATGCAAGTGGTTGGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCTAACA           G  ------------     TT     --T      ACTTGCCCTCACTTAATTTTGGAAAATACATTAGAAAAAAAAAATTGAGTAGTAAAAATATGTGATTTTTTATGGCTTATTTGATAAAAAATGTCTTCACTTATGTTCCACATTGCTAAATGCTTTCACTTGTGTCACACAT
        CAGTGACGGAT CA            AGTGG  GGGTA   GAGGGC                                                                                                                                              
        ||||||||||| ||            |||||  |||||   ||||||                                                                                                                                              T
        GTCACTGCCTA GT            TCACT  CCCGT   TTATGT                                                                                                                                              
ACAATCCC           A  CTTTAAAATAAA     --     TAT      ATATTTAAACATATGTTTTTTTTTATGTATATAATTATCTTCACTCCTGTAAAAAATGGTTTTTCCTGTGTTCACTCGTGTAAAAATGGTTTACCTGGTATTTTTTGTTGAATAAAAATGATAAGTTCACTCCCGTAAATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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