Plant MITE

SE1920215

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4258
Lotus japonicus
SE1920215
Mutator
M40
LjSGA_137567:325-607
GTAACCCGT
GAGAGCTAGATTTGCCACCCCAACCATTAGA

Secondary structure and sequence

TSD TIR

5'

3'

GTAACCCGT  GA C        C                TTTCA      TAAT    -   T   C    -      TTATTTCGGAATCTTAGATTCCGAAATTAATTCGTGATTTTTAGTTCAAAATACATCTAACACCAC
         GA  G TAGATTTG CACCCCAACCATTAGA     CACCCC    TTTC GGA TTT AAGT TCCGAA                                                                  
         ||  | |||||||| ||||||||||||||||     ||||||    |||| ||| ||| |||| ||||||                                                                  A
         CT  T ATCTAAAC GTGGGGTTGGTAATCT     GTGGGG    TGAA GCC TTT GAGT AAAGGC                                                                  
TGCCCAATG  AG A        C                TTACA      ----    T   -   -    C      TTTATAAAGCCTTTATTCCAAAGGCTTCGTGAAAAAATGAGTTTTCACACCAAAAAATGAGTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920215

GTAACCCGTGAGAGCTAGATTTGCCACCCCAACCATTAGATTTCACACCCCTAATTTTCGGATTTTCAAGTTCCGAATTATTTCGGAATCTTAGATTCCGAAATTAATTCGTGATTTTTAGTTCAAAATACATCTAACACCACACTTTTGAGTAAAAAACCACACTTTTGAGTAAAAAAGTGCTTCGGAAACCTTATTTCCGAAATATTTCGGAAACTGAGTTTCCGTAAGTGGGGTGACATTTCTAATGGTTGGGGTGCCAAATCTAATGATCGTAACCCGT

Copy Cancel