Plant MITE

SE1920220

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4263
Lotus japonicus
SE1920220
Mutator
M33
CM0272:369432-369684
TTAATTTTA
AGGGATAATCCTCTACTTGGTCCCTGTGGTTGTGTGGCCGTCTGAAATTAGTCCCTCCCCGGAAAATCTGAAAATCTAAGTTCTCGGGTTTGGAAAGTGTGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTAATTTT    A                                                                                 G         -       GAAAT   TC    CG
        AGGG TAATCCTCTACTTGGTCCCTGTGGTTGTGTGGCCGTCTGAAATTAGTCCCTCCCCGGAAAATCTGAAAATCTAAGTTCTCG GTTTGGAAA GTGTGTG     TAG  CCTC  
        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||     |||  ||||   
        TCCC ATTAGGAGATGAACCAGGGACACCAACACACCGGTAGACTTTAATCAGGGAGGGGCTTTTTAGACTTTTAGATTCAGGAGC CAAACTTTT CACACAC     GTC  GGAG  
ATTTTAAT    A                                                                                 G         T       --ATC   CA    CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920220

TTAATTTTAGGGATAATCCTCTACTTGGTCCCTGTGGTTGTGTGGCCGTCTGAAATTAGTCCCTCCCCGGAAAATCTGAAAATCTAAGTTCTCGGGTTTGGAAAGTGTGTGGAAATTAGTCCCTCCGACGAGGACCTGCTACACACACTTTTTCAAACGCGAGGACTTAGATTTTCAGATTTTTCGGGGAGGGACTAATTTCAGATGGCCACACAACCACAGGGACCAAGTAGAGGATTAACCCTTAATTTTA

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