SE1920233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4276
  • Lotus japonicus
  • SE1920233
  • Mutator
  • M6
  • CM1625:78381-78588
  • TAAAATAAA
  • AGGGTTAATGATCAAATTAGTCTCTGTGTTTATAAGTGAGTTTGATTTTAGTCCCTCTAAGAAAAATGACATTTAGTGGCGGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATAA          A               T            G                CTA           A              -AAAAC  TCAA
        AGGGTTAATG TCAAATTAGTCTCTG GTTTATAAGTGA TTTGATTTTAGTCCCT   AGAAAAATGAC TTTAGTGGCGGTCA      CG    
        |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||   ||||||||||| ||||||||||||||      ||     
        TCCCAATTAC AGTTTAATCAGGGAT TAAATATTTGCT AAACTAAAATCAGGGA   TCTTTTTACTG AAATCACTGCCAGT      GT    
AAATAAAA          C               T            G                -AC           C              AAAAAT  TGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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