Plant MITE

SE1930234

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4277
Lotus japonicus
SE1930234
hAT
Hat2
CM0667:50954-51306
CCCCTATT
TAGAGCTGGGTACGCGGGTGGA

Secondary structure and sequence

TSD TIR

5'

3'

CCCCTATT            C      G  CCGCCC    CA   CC   C   ACAAGCTCGCCCCGCGTTGGCTCGCCCCGCGTAGACCCGCATTTTAGCGGTCCTCTATTTTCCGGGCTATAGCCCGCACTAGTCCGCGGTTTCGCAGGCCGATTCGCGGGCTTTGGCCTCTCTCACCC
        TAGAGCTGGGTA GCGGGT GA      CGCG  GGC  GCC CGC                                                                                                                                
        |||||||||||| |||||| ||      ||||  |||  ||| |||                                                                                                                                 
        ATCTCGACCCAT CGCCCA CT      TCAG  GCG  CCC GGC                                                                                                                                
TTATCCCC            T      G  ------    --   --   -   CGGGCGCACTGGCGCCTGATCACGCCCGATATCGGGCCTTTTATCTCCTGGCAATTTTACGCCCGGATGCGCCTCGCCCGGTCGCGCCCCGCCCAGTTACGCCCCGCCCGGATGCTCCCGTTTTTTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930234

CCCCTATTTAGAGCTGGGTACGCGGGTGGACCGCCCCGCGCAGGCCCGCCCCGCACAAGCTCGCCCCGCGTTGGCTCGCCCCGCGTAGACCCGCATTTTAGCGGTCCTCTATTTTCCGGGCTATAGCCCGCACTAGTCCGCGGTTTCGCAGGCCGATTCGCGGGCTTTGGCCTCTCTCACCCCCTTTTTTGCCCTCGTAGGCCCGCCCCGCATTGACCCGCCCCGCGCTGGCCCGCTCCGCGTAGGCCCGCATTTTAACGGTCCTCTATTTTCCGGGCTATAGCCCGCACTAGTCCGCGGTCACGCGGGCCGGCCCGCGGACTTCGACCCGCTTACCCAGCTCTACCCCTATT

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