Plant MITE

SE1920235

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4278
Lotus japonicus
SE1920235
Mutator
M16
CM0171:387763-387973
AATTTATAT
TGAGTTTAATGGTTGTGCACGGTCAGTGTAAACATTTTTATACAGACGTCCAATAATTGAATGTCACGT

Secondary structure and sequence

TSD TIR

5'

3'

AATTTATA             T      G              -                    ATT AA     C  ATTCAATTG   -TT      A    T    TA
        TGAGTTTAATGGT GTGCAC GTCAGTGTAAACAT TTTTATACAGACGTCCAATA   G  TGTCA GT         CAT   ATGATC TTTT ATTT  
        ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||   |  ||||| ||         |||   |||||| |||| ||||  A
        ACTTAAATTACCA TATGTG CAGTTACATTTGTA AAAATGTGTCTGTAGGTTAT   C  ACAGT CA         GTA   TATTAG AAAA TAAA  
TATATTTA             T      A              C                    CAT CA     T  ---------   TTT      -    T    TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920235

AATTTATATGAGTTTAATGGTTGTGCACGGTCAGTGTAAACATTTTTATACAGACGTCCAATAATTGAATGTCACGTATTCAATTGCATTTATGATCATTTTTATTTTAATTAAATTAAAAGATTATTTTATGACTTGACAACCTACTATTGGATGTCTGTGTAAAACATGTTTACATTGACAGTGTATTACCATTAAATTCAATTTATAT

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