SE1920240

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4283
  • Lotus japonicus
  • SE1920240
  • Mutator
  • M44
  • CM0021:1121803-1121989
  • ATTCCTAAT
  • AATGGGTTTGGATCCTCTCATGTGTAAAAAAACTTGAGAGTGTCAAGTGTCATCATCTCACCATTAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCCT        T           T           C   A           GTC          C         ATTTTATTTTATTTTT
      AATGGGTT GGATCCTCTCA GTGTAAAAAAA TTG GAGTGTCAAGT   ATCATCTCAC ATTAATTTT                
      |||||||| ||||||||||| ||||||||||| ||| |||||||||||   |||||||||| |||||||||                C
      TTACTCGA CCTAGGAGAGT CACATTTTTTT AAC CTCACAGTTCA   TGGTAGAGTG TAATTGAAA                
TAATCC        C           T           A   A           AAA          A         ACACATCTATTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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