SE1920242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4285
  • Lotus japonicus
  • SE1920242
  • Mutator
  • M21
  • CM0044:278881-279080
  • TTTTGAAAA
  • TTTGAAAAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
T   G       AAAAAGGATG          A              -                               GCCACG   ATTAATGAAATTAAA
 TTT AAAAGAG          ATGCACCGAC GTGTAAAGTTTTTT ACACCGTCAACCAATCAGATTTCAAGGATGT      TCA               
 ||| |||||||          |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||      |||               T
 AAA TTTTCTC          TACGTGGCTG CACATTTCAAAAAA TGTGGCAGTTGGTTAGTCTAAAGTTCCTACA      CTC               
A   G       AAATTAAAAA          C              A                               ------   TTTTAGAGAGAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3