SE1950243

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4286
  • Lotus japonicus
  • SE1950243
  • PIF/harbinger
  • To9
  • CM0428:10123-10542
  • TAA
  • AGGAGGCGTTTGGTAGAAGGTTGGGAAATACATTCCCGGGAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   A           G                               --  -        --   GAT G -----------------   GAA  T  -- T       AAAACTTAAGGTGTGTTAGGTTAGGATTTAGGATTCCCAGGAATATTTTTAAATTTTATTTAATTTCAAAATTCAAATATTTAAAATGATACAAAAAAAATGATGGAATTTGTG
  AGG GGCGTTTGGTA AAGGTTGGGAAATACATTCCCGGGAATAATA  TT CTTGGGAG  TCT   T T                 TGG   TA CA  T CCTGGGT                                                                                                                  
  ||| ||||||||||| |||||||||||||||||||||||||||||||  || ||||||||  |||   | |                 |||   || ||  | |||||||                                                                                                                  A
  TCC CCGCAAACCAT TTCCAACCCTTTATGTAAGGGCCCTTACACC  CA CCCTTAGT  AAG   G G                 CCT   TT AA  T ACGGGCC                                                                                                                  
AA   C           G                               TC  T        AT   --- - CACAAACAATATTCCAA   ---  -  CC -       TGTATTTTGTAAGGGCCCTTACCGTATTGAAGGTATTGAAGGCAGTAAACTAAGGGTACTTTACCCAACCCTTAGAACGTAAGGGTACCCTTTCACTTACATTGAAGGGTGATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End