SE1920249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4292
  • Lotus japonicus
  • SE1920249
  • Mutator
  • M39
  • LjT29L18:98937-99502
  • ATAAAAGAA
  • GGCTTAAATATGTTGGAGGTCCCTCTAAAATAGGGGTCATTTGATTAAGGCCCCTATAAATTTTTTTGGGTGGAATAAGCCCCTAATGTGAAAATAATATATATTGATAAGCACCTGCCTTGTGGTTCCGTTTAATTTATGATGATTCTGTAAACGACGCTGAC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAAAGAA                                G          A                                                           T        A      T  T               A                 A       GTGAATTA                    A     AA     CCAC          GAG                  AAAATAAAA                       -C   TG
         GGCTTAAATATGTTGGAGGTCCCTCTAAAATA GGGTCATTTG TTAAGGCCCCTATAAATTTTTTTGGGTGGAATAAGCCCCTAATGTGAAAATAATATATA TGATAAGC CCTGCC TG GGTTCCGTTTAATTT TGATGATTCTGTAAACG CGCTGAC        TATTTTGTGAAAATTATTCA TTAAA  GGGTG    GTAAGTAAAT   GGTTGAAAAAAATAAAAA         ACCCAAAGTAAAAAACCCAAGTA  GTT  
         |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||||| ||||||||||||||||| |||||||        |||||||||||||||||||| |||||  |||||    ||||||||||   ||||||||||||||||||         |||||||||||||||||||||||  |||   
         CCGAATTTATACAACCTCCAGGGAGATTTTAT CTCAGTAAAC AATTCCGGGGATGTTTAAAAAAACCCACCTTATTTGGGGATTACACTTTTATTATATAT ACTATTCG GGACGG AC CCAAGGCAAATTAAA ACTACTAAGACGTTTGC GCGACTG        ATAAAACACTTTTAATAAGT AATTT  CTCAC    CATTCATTTA   CCAACTTTTTTTATTTTT         TGGGTTTCATTTTTTGGGTTCAT  TAG  
AAGAAAATA                                A          C                                                           C        G      C  T               G                 C       AATCTAAG                    C     CC     AGCA          ATA                  ---------                       TT   GA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End