Plant MITE

SE1910250

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4293
Lotus japonicus
SE1910250
Tc1/Mariner
St9
CM1729:42081-42393
TA
TACTCCCTCCGTTCCAAAATAGTTGTTATTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

                    A      A   A  GTAATG      --       AGCTCATTAATTGATATAATATTTGACTAGAACACCCCTATTTAAAGTTGAGTTATATAAAGATAGAGAATGATAATTATTGGTTAAGTGATTGGTGGACATT
TACTCCCTCCGTTCCAAAAT GTTGTT TTT AG      CACATA  GTTTAAG                                                                                                       
|||||||||||||||||||| |||||| ||| ||      ||||||  |||||||                                                                                                        
ATGAGGGAGGCAAGGTTTTA CAACAA AAA TC      GTGTAT  AAGGTTT                                                                                                       
                    C      C   A  -AAAAA      AT       ACCAACAACAAAATCTTTAAGTTCTAAACAGTGTAGAAGAAAGTATATGTGGGAGTAAATTATAACATAGAGAGTAGATGGTGGAAGTTAAGAGTGGTTAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910250

TACTCCCTCCGTTCCAAAATAGTTGTTATTTAAGGTAATGCACATAGTTTAAGAGCTCATTAATTGATATAATATTTGACTAGAACACCCCTATTTAAAGTTGAGTTATATAAAGATAGAGAATGATAATTATTGGTTAAGTGATTGGTGGACATTGTGATTGGTGAGAATTGAAGGTGGTAGATGAGAGATACAATATTAAATGAGGGTGTATATGAAAGAAGATGTGACAAATCTTGAATTTCTAAAACAACAACCATTTGGAATATATGTGAAAAACTAAAACAACAACCATTTTGGAACGGAGGGAGTA

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