Plant MITE

SE1930261

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4304
Lotus japonicus
SE1930261
hAT
Hat3
LjT10I14:21878-22539
GTTATAAT
GTTATAATCAGTGTTTTAAGACTCGGCTCGGTCATCGACTC

Secondary structure and sequence

TSD TIR

5'

3'

                               T ATC         A   - AC     CA     T A       GACCAGTGAGTCACTGGTTCGATTGCTTGACTTGGTGTATATTAAAAAATTATAAAAATATTCATTCCAATGTTAAGTTAAAATATTAATAATGAAAGACGAGTCTTTATCATCAATGTCAATATGGTATAATGGTAAAGTATTTCCCATATTTCCTTCAGGTCCCGTGCTCGAGCCCCACTGGTACCAGTTTTTGAAATATTTCAGGTTTTTATTTTCTCTAATCAAATGTTGTTAATAGAACATGGGAAAAAAATGA
GTTATAATCAGTGTTTTAAGACTCGGCTCGG C   GACTCGGTG GGG T  TGAGT  ATGGG C CTGGTCG                                                                                                                                                                                                                                                                   
||||||||||||||||||||||||||||||| |   ||||||||| ||| |  |||||  ||||| | |||||||                                                                                                                                                                                                                                                                   A
TAATATTGGTCACAAAATTTTGAGTCGAGCC G   CTGAGCCAC TGA C  TGGCC  AGGCT G GAGTGTA                                                                                                                                                                                                                                                                   
                               T GCC         -   T --     --     C -       GACTAGCCGACACGTACACTGAGCCAGCCTTGGCCAAACTTGGCCGGCCAAGCTACTAATTGAGCCACTGAGCCGGCCAAAAGCTAGTCTGGCCAGTCAGTGGGAAAAAAAAAACATTAATAAAAGAAATTACGACAATTACCTAGTATGACACCCGAAAAGAAAAGGATTGTTCAATAATAAATTATGTCACCCGGAAAGTGTAAAAAAAATTTAATACAGGTGTTATCAACTAAAGATCGAACTAATCTCACTCGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930261

GTTATAATCAGTGTTTTAAGACTCGGCTCGGTCATCGACTCGGTGAGGGTACTGAGTCAATGGGTCACTGGTCGGACCAGTGAGTCACTGGTTCGATTGCTTGACTTGGTGTATATTAAAAAATTATAAAAATATTCATTCCAATGTTAAGTTAAAATATTAATAATGAAAGACGAGTCTTTATCATCAATGTCAATATGGTATAATGGTAAAGTATTTCCCATATTTCCTTCAGGTCCCGTGCTCGAGCCCCACTGGTACCAGTTTTTGAAATATTTCAGGTTTTTATTTTCTCTAATCAAATGTTGTTAATAGAACATGGGAAAAAAATGAAAGGCTCACTCTAATCAAGCTAGAAATCAACTATTGTGGACATAATTTAAAAAAAATGTGAAAGGCCCACTGTATTAAATAATAACTTGTTAGGAAAAGAAAAGCCCACAGTATGATCCATTAACAGCATTAAAGAAAATAATTACAAAAAAAAAAGGGTGACTGACCGGTCTGATCGAAAACCGGCCGAGTCACCGAGTTAATCATCGAACCGGCCGGTTCAAACCGGTTCCGACCGAGTCACATGCACAGCCGATCAGATGTGAGGCTCGGACCGGTCTAGTCACCGAGTCCCGGTCCGAGCTGAGTTTTAAAACACTGGTTATAAT

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