SE1920264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4307
  • Lotus japonicus
  • SE1920264
  • Mutator
  • M21
  • CM0118:24286-24486
  • TTATGATAA
  • TATGATAAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
T   G       TTTAATTTCT                                     C          C   A     AGAAAAACTC    T   T     T
 TAT ATAAGAG          ATGCACCGACGGTGTAAAGTTTTTTTACACCGTCAAC AATCAGATTT AAG ATGTG          TCAT TTA TTAAT 
 ||| |||||||          ||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||          |||| ||| ||||| T
 ATA TATTCTC          TACGTGGCTGCCACATTTCAAAAAAATGTGGCAGTTG TTAGTCTAAA TTC TACAC          GGTG AGT AATTA 
A   G       TTTTTCAAAC                                     A          A   C     ----------    C   T     C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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