Plant MITE

SE1910268

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4311
Lotus japonicus
SE1910268
Tc1/Mariner
St4
LjSGA_051207:1094-1374
TA
TACTCCCTCCGTCCCTAATTATAAGCTAAAGTTG

Secondary structure and sequence

TSD TIR

5'

3'

                             A    --------TAAAAA    ACTTAT    AA     TAATTGA    TT    TTCAAAAAA     ACAA                --C       -GATAACACTTTT         TAC
TACTCCCTCCGTCCCTAATTATAAGCTAA GTTG              TCAC      TAAG  AGCCT       TGCA  GGTT         AATGT    CTTTCTATGTTTACCC   TATTTAT             TCATCATTG   
||||||||||||||||||||||||||||| ||||              ||||      ||||  |||||       ||||  ||||         |||||    ||||||||||||||||   |||||||             |||||||||    
ATGAGGGAGGCAGGGATTAATATTCGATT TAAC              AGTG      ATTC  TTGGA       ACGT  TCAA         TTATA    GAAAGGTATAAGTGGG   GTAAATA             GGTGGTAAT   
                             G    TCTGAAAAAAACAC    ATTTAT    GA     -------    TT    ---------     --AA                AAC       ACCATCACCTCGT         CAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910268

TACTCCCTCCGTCCCTAATTATAAGCTAAAGTTGTAAAAATCACACTTATTAAGAAAGCCTTAATTGATGCATTGGTTTTCAAAAAAAATGTACAACTTTCTATGTTTACCCCTATTTATGATAACACTTTTTCATCATTGTACTACTAATGGTGGTGCTCCACTACCAATAAATGCAAGGGTGAATATGGAAAGAAATATTAACTTTTGCAAGGTTAGCTTATATTTAGTGACACAAAAAAAGTCTCAATGTTAGCTTATAATTAGGGACGGAGGGAGTA

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