SE1950269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4312
  • Lotus japonicus
  • SE1950269
  • PIF/harbinger
  • To2
  • LjSGA_129801:393-679
  • TAA
  • AGGCCCCGTTTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C       TAAAC      A  A   ----------        TC   ----   GCTTATGACATAAGCGCTTATTCATAAGCTATTTTTAAAAATTTATTGAAATAAATTAAAAATAAGCTGTGTATAAGCATAAGCTGTTT
  AGGCCC GTTTGGA     AGCTTA TT AGC          GCTTATGG  ATA    AGC                                                                                         
  |||||| |||||||     |||||| || |||          ||||||||  |||    |||                                                                                          
  TCCGGG CAAACCT     TCGAAT AA TCG          CGTATTCG  AGA    GGT                                                                                         
AA      T       ---TC      A  C   AATAGACTAT        --   ATAC   CACAAACCCTCTCGAATACGTTTGTCGAATACCAGACGGTATTCGATAAAAGTCGAATAAAAGTATTCGATGAGTCCTATCGAATACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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