SE1930272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4315
  • Lotus japonicus
  • SE1930272
  • hAT
  • Hat7
  • CM0803:64422-64951
  • CTTAATAT
  • CATAGTAGTCAAT

Secondary structure and sequence

TSD    TIR
5'



3'
CTTAATAT             ----A        --  A  G  GTA C -   C    CGACTCCCTGCCGCTATTGAAATGAAATAGCGGCGCACTTCACAATAGCGGCCGTAGCGGCGCAAATAGCGGCAAATCGCGGCCAATAGCGGGAAATAGCGGCGCTATATGGATGAACAGAAAAATGACTCAAGCCCCTCAGTTTTAAATCGTTAGGGGACCTTTTTAGGGGCATTTTAGAACTTCTTAGGGCCATTTTAGGTCAAACTTGA
        CATAGTAGTCAAT     GCGCCGCT  AT GC GC   G G GGG GGAG                                                                                                                                                                                                                    
        |||||||||||||     ||||||||  || || ||   | | ||| ||||                                                                                                                                                                                                                     
        GTATCATCAGTTA     TATCGCCG  CG GG TT   T C CCC TATC                                                                                                                                                                                                                    
TATAATTC             GGGCC        AC  A  -  --T - A   -    GCCCTACTGGCGATAAGTCTAAAAAATATATATTAATTGTCAAATTATGTATATTTATGTTTTTTTTACAGTTTATAACGGATTTTAAGTATTGTAAGTATTATCTTTATTTTAGTATTCAGAACTTGTTATTGTGTGTTGATTTTTGGTGAGTTTTCGTTCCGTTTCTTCAGCCTAAACGTTTAGACTTACTTCTTACTTCGAAGTAAGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End