Plant MITE

SE1910273

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4316
Lotus japonicus
SE1910273
Tc1/Mariner
St7
CM0012:956318-956574
TA
TACTACCTCCGTTCGTATTTAACTGTCC

Secondary structure and sequence

TSD TIR

5'

3'

              G AT          ------    A    ---     ------     -A   AGGAGTGCATTGTTAATTTTCAGAAAAATATTATTTGTTTTCCTATTTTACCCTTTAAAATGTGTTTTAT
TACTACCTCCGTTC T  TTAACTGTCC      TGAG GAGG   AGAAA      CACAT  TTA                                                                      
|||||||||||||| |  ||||||||||      |||| ||||   |||||      |||||  |||                                                                       
ATGATGGAGGCAAG A  AATTGACAGG      TTCT TTTT   TTAAG      TAGAC  GCG                                                                      
              G AT          TGAAAC    -    TTT     GATATA     AG   AATCGTAAAGTTCTGGTAATTTAATACAAAAAGGATTATCCCAGTAACATACTCGTTATTTACTCCCTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910273

TACTACCTCCGTTCGTATTTAACTGTCCTGAGAGAGGAGAAACACATATTAAGGAGTGCATTGTTAATTTTCAGAAAAATATTATTTGTTTTCCTATTTTACCCTTTAAAATGTGTTTTATCTTCCCTCATTTATTGCTCATACAATGACCCTATTAGGAAAAACATAATTTAATGGTCTTGAAATGCTAAGCGGACAGATATATAGGAATTTTTTTTTTCTTCAAAGTGGACAGTTAATAAGGAACGGAGGTAGTA

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