SE1950274

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4317
  • Lotus japonicus
  • SE1950274
  • PIF/harbinger
  • To10
  • CM0375:436272-436680
  • TAA
  • AGAGCATCTCCAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -         ----    CTTATTTTGGAGTTAAGAACTAAGAACTAAGAACTTTACCATTGGAGGTGCTGACATGGACTCCTTAGTTCTTAAAAATAAGAACTCAGTTCTTATATAAGATGTTTTGCTTTTTGAGTTCTTAGCTTAAAATATTAATTATTTCTCTCTCATCCAAATTACTTTATTACT
  AGAGCATCTCCAATGC AAGGTTCTT    AGTT                                                                                                                                                                           
  |||||||||||||||| |||||||||    ||||                                                                                                                                                                            
  TCTCGTAGAGGTTACG TCAAGAATA    ATCA                                                                                                                                                                           
AA                A         AAGA    AGAATCGTGATAAGTACACCCGGGCATAACGGTGTACGCAAATTCGTTGAGAGTTCATTAAAACGAGGTTAGTACTCAAGAATCAAGAATCAAAAATGATGATAAGTAAACCAGGGTGGTTGGTGTAATAAATATGAAAAAAAGGTATTTCATTATTTTGTTTTGAGTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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