SE1950278

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4321
  • Lotus japonicus
  • SE1950278
  • PIF/harbinger
  • To2
  • CM0574:61819-62105
  • TAA
  • AGGCCCCGTTTGGAAGAGCTTATTTGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ---      T      TTATCTGAGA        --    ATG  - GTGTTTGGGAGAGCTTATGCAAACAGCTTATGGTAGGCCATAAGCTATTTTGAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGA
  AGGCCCCGTTTGGAAG   AGCTTA TTGAGC          GCATAAGC  TCTT   TC A                                                                                        
  ||||||||||||||||   |||||| ||||||          ||||||||  ||||   || |                                                                                         
  TCCGGGGCAAACCTTT   TCGAAT AATTCG          CGAATACT  TATT   CG G                                                                                        
AA                GTG      T      ----------        AA    ---  C AATACTGTATTCACGAATAAGTATTCGATAAAATTTTATAAATAACTTTATTTAGCTTTTATTCGATATATATTCGTATTCGAGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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