Plant MITE

SE1920279

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4322
Lotus japonicus
SE1920279
Mutator
M50
LjT15N12:59669-59879
AAGATCATT
GATCATTGAGAAATGCTAGCAACACACTC

Secondary structure and sequence

TSD TIR

5'

3'

 AA    A     AAA     G     C    -----  TAAATGGACTTAAGGACACACTCCAACACACTCATAATGATTGATTTATTTTTTAAAAAAGTTAAAACAT
   GATC TTGAG   TGCTA CAACA ACTC     CT                                                                      
   |||| |||||   ||||| ||||| ||||     ||                                                                       
   CTAG AACTC   ACGAT GTTGT TGAG     TC                                                                      
TTA    -     CTC     G     A    AAAAA  CTGTGTGAGGTTGTGTGAGTAACACTAACCAAATAACAAACTTTTCAGTTATGTAAAGCGAGGATTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920279

AAGATCATTGAGAAATGCTAGCAACACACTCCTTAAATGGACTTAAGGACACACTCCAACACACTCATAATGATTGATTTATTTTTTAAAAAAGTTAAAACATTTTTTTAGGAGCGAAATGTATTGACTTTTCAAACAATAAACCAATCACAATGAGTGTGTTGGAGTGTGTCCTAAAAAGAGTATGTTGGTAGCACTCCTCAAGATCATT

Copy Cancel