SE1920280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4323
  • Lotus japonicus
  • SE1920280
  • Mutator
  • M13
  • CM0042:1353380-1353924
  • TAAAGATGT
  • GGCTTAATTGCAACTTTGGTCCCTGACATTTACAAAAGTCACGATTTTGGTCCCTCACCTAATTTAATTACAAAAATCGTCCCTCACCTAACACTTCGTGAACAACGTTGGTCCAACCGTCAATTTTTTAACGGAAGAAGCTTACGTGGCGTCTGAAAGCTTATGTGGAAGTGCCACTGGCGTCAG

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAGATGT                                C                        C                                      C        C        A                             C    C  C          T                C TC  AATCAATTTTTCCTCT     --    -T  TTT  --   - CTCATAGTGAAGCTTTGCTGTTGGGAGGCCTAGTTGTTGGAACGCT
         GGCTTAATTGCAACTTTGGTCCCTGACATTTA AAAAGTCACGATTTTGGTCCCTCA CTAATTTAATTACAAAAATCGTCCCTCACCTAACACTT GTGAACAA GTTGGTCC ACCGTCAATTTTTTAACGGAAGAAGCTTA GTGG GT TGAAAGCTTA GTGGAAGTGCCACTGG G  AG                CCTCT  CGGC  GT   TT  TTA T                                              
         |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||| |  ||                |||||  ||||  ||   ||  ||| |                                              G
         CCGAATTAACGTTGAAACCAGGGACTGTAAAT TTTTCGGTGCTAAAACCAGGGAGT GATTAAATTAATGTTTTTAGCAGGGAGTGGATTGTGAG CACTTGTT CAACCAGG TGGCAGTTAAAAAATTGCTTTCTTCGAAT CGCC CA ACTTTTGAAT CACCTTCACGGTGACC C  TC                CTCCG  TACG  GA   TG  GAG C                                              
TGTAGAAAT                                A                        T                                      A        T        C                             A    A  A          C                T TC  ---------------C     TG    GA  ---  TA   T TCCTTTTTTGTTTTTTTGAGTTTCCTTATCGTGTGTTGGAGTTAGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End