Plant MITE

SE1910286

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4329
Lotus japonicus
SE1910286
Tc1/Mariner
St7
LjB19M02:32115-32381
TA
TACTCCCTCCGTTCCTATTTAACTGTCCACTTTGAGT

Secondary structure and sequence

TSD TIR

5'

3'

                                     ----------G    C     -    --   ---  -------  T      --- TTTGTTGATTTTAGAAAAAGTGAGGATTATTTTTCTATTTTATCCTTTAAAGTA
TACTCCCTCCGTTCCTATTTAACTGTCCACTTTGAGT           GAGG ACACA TATT  AAG   GG       TG GATTAA   T                                                      
|||||||||||||||||||||||||||||||||||||           |||| ||||| ||||  |||   ||       || ||||||   |                                                      T
ATGAGGGAGGCAAGGATAAATTGACAGGTGGAACTTA           AGGA TAAAT GACA  TGA   GT       TC TCGTAA   A                                                      
                                     AAAAAAAAACA    -     T    GG   ATC  AAAGTTC  -      TTT CTACAAAAATGTTGTTTACGGGAACAGTCATGTTATTTACTCCTCTCTATTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910286

TACTCCCTCCGTTCCTATTTAACTGTCCACTTTGAGTGGAGGCACACATATTAAGGGTGTGATTAATTTTGTTGATTTTAGAAAAAGTGAGGATTATTTTTCTATTTTATCCTTTAAAGTATGTGTTATCTCTCCTCATTTATTGTACTGACAAGGGCATTTGTTGTAAAAACATCATTTAATGCTCTCTTGAAATGCTAAGTGGACAGTTAAATAGGAACAAAAAAAAAATTCAAGGTGGACAGTTAAATAGGAACGGAGGGAGTA

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