Plant MITE

SE1930287

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4330
Lotus japonicus
SE1930287
hAT
Hat5
CM0368:169038-169610
GTTCTCAT
ATTAGGGATGGCAATGGGT

Secondary structure and sequence

TSD TIR

5'

3'

GTTCTC           C       -----A   TACTATAGTACCCATCCCCATACCCGTGTTTTCAAAAATTACCCATACCCGTACCCATACCCGCGTGGGTAGCAACTTGAATGCCCGTCCCCGTACCCTCTGGGCACCTATATACCCGTACCCGAGCCCATTACCCGCAATTTAGCTAACCAAAATATAAATTTTCACCACTTTTGTTAATAGAAAACAAAAATACAACTTTAAAAATAAGCGAGAAAGATATAACTTAAATTTATAATTTTAGATTTATAATAA
      ATTAGGGATGG AATGGGT      GGG                                                                                                                                                                                                                                                               
      ||||||||||| |||||||      |||                                                                                                                                                                                                                                                                
      TGATCCCTACC TTACCCA      GGG                                                                                                                                                                                                                                                               
TACTCT           T       GATCCT   TATCCCATGGGCGTTTTTTATGGGTGATACCCATCCCATTTTTGGGCGTTTTACCCATACCCCAACCCATACTCATTAATGGGCGTTTTTCATCACCCATACCCACGCCCATACCCGTGATATCATGGGTTGGGCGGGGTACGGGCGTGTGTATATAATAATAATAATAATCCATTAATTCTATAACTATTAATAACGATTAAATGAGGTTGAACAAAAATTTTAATCATTAAATTATTGGACGTTAAATCCTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930287

GTTCTCATTAGGGATGGCAATGGGTAGGGTACTATAGTACCCATCCCCATACCCGTGTTTTCAAAAATTACCCATACCCGTACCCATACCCGCGTGGGTAGCAACTTGAATGCCCGTCCCCGTACCCTCTGGGCACCTATATACCCGTACCCGAGCCCATTACCCGCAATTTAGCTAACCAAAATATAAATTTTCACCACTTTTGTTAATAGAAAACAAAAATACAACTTTAAAAATAAGCGAGAAAGATATAACTTAAATTTATAATTTTAGATTTATAATAAACTCCTAAATTGCAGGTTATTAAATTACTAATTTTAAAAACAAGTTGGAGTAAATTAGCAATAATTATCAATATCTTAATTACCTAATAATAATAATAATATATGTGTGCGGGCATGGGGCGGGTTGGGTACTATAGTGCCCATACCCGCACCCATACCCACTACTTTTTGCGGGTAATTACTCATACCCAACCCCATACCCATTTTGCGGGTTTTTACCCTACCCATAGTGGGTATTTTTTGCGGGTACCCTATGGGTCCTAGACCCATTTCCATCCCTAGTTCTCAT

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