Plant MITE

SE1920288

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4331
Lotus japonicus
SE1920288
Mutator
M6
CM0432:2877840-2878072
TAATTTCAT
GGGTTAATGGTCAAATTAGTC

Secondary structure and sequence

TSD TIR

5'

3'

TAATTTCAT                  G  CATAAT   A   CC                 C   A  A    A            ----    TTAAAAACCGCCAATAATTGTAA
         GGGTTAATGGTCAAATTA TC      TTT TAA  GAGTTTGATTTTAGTCT TCT AG AAAA TGACGTTTAGTG    ACGA                       
         |||||||||||||||||| ||      ||| |||  ||||||||||||||||| ||| || |||| ||||||||||||    ||||                       A
         CCCAATTACCAGTTTAAT AG      AAA ATT  TTCAAATTAAAATCAGG AGA TC TTTT ACTGCAAATCAC    AGTA                       
TACTTTAAT                  A  CGACTC   C   CA                 A   C  C    C            CACC    AAAATATTAATCACCACCAGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920288

TAATTTCATGGGTTAATGGTCAAATTAGTCCATAATTTTATAACCGAGTTTGATTTTAGTCTCTCTAAGAAAAAATGACGTTTAGTGACGATTAAAAACCGCCAATAATTGTAAAAATGACCACCACTAATTATAAAAATGACCACCACTAAACGTCACTTTTCCTCAGAAGGACTAAAATTAAACTTACTTACAAACTCAGCGAATAATTTGACCATTAACCCTAATTTCAT

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