Plant MITE

SE1920289

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4332
Lotus japonicus
SE1920289
Mutator
M1
LjT45L18:24682-24891
TATAATTTA
TAGGGTTAAGGGTCATATTAGTCCCTGTGTTTGTAAAAACGTTTGATTTTGGTCCTTCAGTCAAAAAACCACCAGT

Secondary structure and sequence

TSD TIR

5'

3'

TATAATT                        C             AC                 C          CC  ---------------------    -AACT   TTAT
       TAGGGTTAAGGGTCATATTAGTCC TGTGTTTGTAAAA  GTTTGATTTTGGTCCTT AGTCAAAAAA  AC                     CAGT     GTA    
       |||||||||||||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||  ||                     ||||     |||     
       ATCCCAATTCCCAGTATAATCAGG ACACAAACATTTT  CAAACTAAAACCAGGGA TCAGTTTTTT  TG                     GTCA     CGT    
ATTTAAT                        T             CA                 A          AC  CTAATCACTGCCAAAAAAAAT    ATCAT   CAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920289

TATAATTTAGGGTTAAGGGTCATATTAGTCCCTGTGTTTGTAAAAACGTTTGATTTTGGTCCTTCAGTCAAAAAACCACCAGTAACTGTATTATAAACTGCTACTAACTGTAAAAAAAACCGTCACTAATCGTCATTTTTTGACTAAGGGACCAAAATCAAACACTTTTACAAACACATGGACTAATATGACCCTTAACCCTATAATTTA

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