SE1950292

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4335
  • Lotus japonicus
  • SE1950292
  • PIF/harbinger
  • To10
  • LjT37K03:50578-50987
  • TAA
  • AGAGCATCTCCAATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                --T         TTTTT     TTAGCACTATTCATGTGGGTCCGTACTGCCACATGTGCTTAAGCAACTCTTTGCAGATTTTGCTCCAACCATGAGTTCTTAGTTCTTAGTTCTTAGTTCTTATCACTATTCATCCGGTCCTACAATACCATTATTTTCATATAATTTTGATTTAAATTTAAATACTAA
  AGAGCATCTCCAATGT   AGTTCTTAA     AGTTC                                                                                                                                                                        
  ||||||||||||||||   |||||||||     |||||                                                                                                                                                                        T
  TCTCGTAGAGGTTACG   CAAGAATCA     AGAAT                                                                                                                                                                        
AA                TTC         -----     AAAAACTCAATTCTTGATTCTTGACTCAAGAATTGGTAACCTCCCCTACTGCACCTCAAGAATCAAGAATTTTTATTCTTGATCCAAGAATATATTCTACAAAATGAAAACTCAAGAATCGTATTTTTCAATTTAAAAAGAGAGAGTAAGTAAATTAAATTCATAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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