SE1950293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4336
  • Lotus japonicus
  • SE1950293
  • PIF/harbinger
  • To2
  • CM1598:120229-120488
  • TAA
  • AGGCCCCGTTTGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               -----     TATTTGAGCTTATCTGATAGCATAAGCGCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGACCTACCATAAGCTGTTTTGAGCTTATTTTCATAAG
  AGGCCCCGTTTGGAA     GAGCT                                                                                                         
  |||||||||||||||     |||||                                                                                                         C
  TCCGGGGCAAACCTT     CGAAT                                                                                                         
AA               TTTTT     TACTATATTCGCGAATAAGTATTCGATAAAATTTTTCAAATAACTTTATTTAATTTTTATTCGATATATATTCGTATTCGAGAAAAAGTATTCGATAGAACTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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