SE1930297

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4340
  • Lotus japonicus
  • SE1930297
  • hAT
  • Hat2
  • CM0279:486286-486593
  • TTTAGAAC
  • TTTAGAACTAGAGCTGGGTAAGCGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
        AC            A      CGAA    ATGA   GA      A AC    GACTA   -   -    TAGCCCGAAAAATAGAGGACCGCTAAAATGCGGGTCTACGCGGAGCGGGTTAGTGCGGGGCGGGCGTACGAGGACAAAAAAGGAG
  TTTAGA  TAGAGCTGGGTA GCGGGT    GTCC    GCC  CGCGCG G  CGCC     GTG CGG GCTA                                                                                     
  ||||||  |||||||||||| ||||||    ||||    |||  |||||| |  ||||     ||| ||| ||||                                                                                      
  AGATTT  ATCTCGACCCAT CGCCCA    CGGG    CGG  GCGCGT C  GCGG     CGC TCC GGCG                                                                                     
CA      --            G      --AC    ----   -G      C GA    ---GG   A   G    TAAAATCGCCAGGAAATAAAAAGCCCGATGTTGGGCGTAATCAGACGCTAAAGTGCCCAGCCAGGCGCCTGAAACCGAAGAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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