SE1930298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4341
  • Lotus japonicus
  • SE1930298
  • hAT
  • Hat42
  • CM0104:1954614-1954770
  • ATTTTGAC
  • CAGTGTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTGAC         -CA -  AGCGGTTCTAGCAGCGCTCTAGCGTAGTGCTCTGGGGGCTCATCGCTATTTTCCG
        CAGTGTTGT   A AT                                                       
        |||||||||   | ||                                                       C
        GTCACAACA   A CG                                                       
CAGTTTTA         ATT G  CCTTTCGGTTTTTAGGCGATAAAATTCGGGAGTATCGCCTTTTATCGCCTGTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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