SE1920299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4342
  • Lotus japonicus
  • SE1920299
  • Mutator
  • M5
  • CM1864:123549-123748
  • TTTAGTTAT
  • GAGATTAATTTATATGCACTAACGGTGTAAAACGTTTTATACAATCATTCAATCACAACCTTCTAGTTCATATTTTAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAGTTAT           A        A          -AC         A      C       A      --------        -----        ATTA
         GAGATTAATTT TATGCACT ACGGTGTAAA   GTTTTATAC ATCATT AATCACA CCTTCT        AGTTCATA     TTTTAAGT    
         ||||||||||| |||||||| ||||||||||   ||||||||| |||||| ||||||| ||||||        ||||||||     ||||||||     
         CTCTAATTAAA ATACGTGA TGTTACATTT   TAAAATGTG TAGTAA TTAGTGT GGGAGG        TCGAGTAT     AAAATTTA    
TATTGATTT           G        C          ATT         G      A       A      TAAAACAA        TAATT        AATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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