SE1930304

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4347
  • Lotus japonicus
  • SE1930304
  • hAT
  • Hat11
  • LjSGA_073213:458-808
  • GTGGTGCC
  • GGTGCCCAGTGACGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
GT      --   T        ------------C        ATTTTATGTAGTGAGGGCGATATATACATATAAATTCGTAATAAGAAAATTAACATATTATATTAGAAGTGAAGACATTTTTTACCAAATGGGTCATAAAAAATCACATACTTTTACCACTCAAGTGAGAGCATTTAGGA
  GGTGCC  CAG GACGGATC             AGAAAGAA                                                                                                                                            
  ||||||  ||| ||||||||             ||||||||                                                                                                                                            A
  CCGTGG  GTC CTGCCTAG             TCCTCCCG                                                                                                                                            
        TG   C        ATAAATCACCTCA        TTCACGGGAGTGAATTTATACTTTTTTATGTAATCTTTTTTTAAACTCATCATTTTCATACACCAAAAAATACTAAGGAAACTATTTTTAACGAGAGTGAATATAAGGTGTAACAATTTACGGGGGTGAACACAAGATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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