Plant MITE

SE1950314

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4357
Lotus japonicus
SE1950314
PIF/harbinger
To25
LjSGA_062670:862-1255
TAA
AGGGGGCGTTTGTTTCAAGGTTTGAGA

Secondary structure and sequence

TSD TIR

5'

3'

TA                        A  -TCAC                TAT   -       ------  GA    CGGGTATGTTACTCCTGGGTAAATTTTATAAATGTGTTTGGTAAGTATTGTGTATTCTTGGGAACATTTTAAAATTTTCTTAGTTTAAAAAAAAAAAACTTAAAAATAGAGGTAAGATTCTCATGG
  AGGGGGCGTTTGTTTCAAGGTTTG GA     ATTCCCGGGAGAATGT   TCC CAGGAAT      AT  TTAC                                                                                                                              
  |||||||||||||||||||||||| ||     ||||||||||||||||   ||| |||||||      ||  ||||                                                                                                                               
  TCCTCCGCAAACAAAGTTCTAAAC CT     TAAGGGCCCTTATACT   TCC ACCCTTA      AG  GACA                                                                                                                              
AA                        -  TTCTC                ---   A       TTTGTA  --    CAAACAATGTTCTAACCTTTGATACTAAGGACCCATAGTTAGTAAGGGCCCTTATTTTATTGAAGGTGTTAAGGGTACTAAAGGAAGTATAACTGAGGGTACTTTTTCTAACCCTTAGAATGTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1950314

TAAGGGGGCGTTTGTTTCAAGGTTTGAGATCACATTCCCGGGAGAATGTTATTCCCAGGAATATGATTACCGGGTATGTTACTCCTGGGTAAATTTTATAAATGTGTTTGGTAAGTATTGTGTATTCTTGGGAACATTTTAAAATTTTCTTAGTTTAAAAAAAAAAAACTTAAAAATAGAGGTAAGATTCTCATGGGAATGTAAGATTCCCAATCTTTTTCATGGGAGTCAATATGAAGGAAATCATGGGAATTGTGGAAGTTATTTTATTCCCGGGAATGATTGATACCCAGGAATCATAGTTTCCAATCTTGTAACAAACACAGGAATGTTTATTCCCAACCTTCATATTCCCGGGAATCTCTTTCCAAATCTTGAAACAAACGCCTCCTAA

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