Plant MITE

SE1950315

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4358
Lotus japonicus
SE1950315
PIF/harbinger
To6
LjSGA_057011:440-582
TTA
AGTGCATGTTTTGATACACG

Secondary structure and sequence

TSD TIR

5'

3'

TT           TG       ATAA    C   AT    -CC                AAA    ---  TCC
  AGTGCATGTTT  ATACACG    AAAA CAC  TGAG   AAAATCATGGTGGACA   GCAA   CT   
  |||||||||||  |||||||    |||| |||  ||||   ||||||||||||||||   ||||   ||    
  TCACGTACAAA  TATGTGC    TTTT GTG  ACTT   TTTTAGTGCCACCTGT   TGTT   GA   
AT           CA       -ACC    A   CT    CAA                CGG    TTC  TTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE1950315

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE1950315