SE1920318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4361
  • Lotus japonicus
  • SE1920318
  • Mutator
  • M6
  • CM0432:2877840-2878072
  • ATGAAATTA
  • GGGTTAATGGTCAAATTATTCGCTGAGTTTGTAAGTAAGTTTAATTTTAGTCCTTCTGAGGAAAAGTGACGTTTAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGAAATTA                  T  GC   G       G A     A         C                               ATTTTTATAATTAGTGGTGGTCA
         GGGTTAATGGTCAAATTA TC  TGA TTTGTAA T AGTTT ATTTTAGTC TTCTGAGGAAAAGTGACGTTTAGTGGTGGTC                       
         |||||||||||||||||| ||  ||| ||||||| | ||||| ||||||||| |||||||||||||||||||||||||||||||                       T
         CCCAATTACCAGTTTAAT AG  ATT AAATATT G TCAAA TAAAATCAG GAGATTCTTTTTTACTGCAAATCACTGCTAA                       
ATTAAAGTA                  C  GT   A       G C     C         A                               TTTTTGGCGGTTATTAACATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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