Plant MITE

SE1930319

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4362
Lotus japonicus
SE1930319
hAT
Hat23
CM0081:291815-292544
ATTGTAGT
ATTGTAGTTAGGGGTGGAAATAGGCCAGCCG

Secondary structure and sequence

TSD TIR

5'

3'

                          -     GC    CAG -  CCTATGACTCGGCTCGTCTGAGGCTCGGCCCGACCTGGCTCGTTTATTAAAAAGGTCAGGCTTAGGCTTTTTAAAAGGTCTATTTAACTAAAAAGGTCAGGCCCAAACAATTTAAAAAGCCTATTTAGCCTGATAGGCCGGCCTACTTATATATTGTTTTTATTAATAATATAAATAAATATAATTTAATTATATATAATATAATTTTTTTTAAACTGATGTATACTTTAGTATAAAAGAAAACCCTAAGTCTCTACCCTAACCTAGATTAGAAACGTTCCAAACATATTCAGCATAACACATCCTCAACCACACAGGACGCA
ATTGTAGTTAGGGGTGGAAATAGGCC AGCCG  TCGT   G GG                                                                                                                                                                                                                                                                                                                                   
|||||||||||||||||||||||||| |||||  ||||   | ||                                                                                                                                                                                                                                                                                                                                   G
TGATGTTAATCCCCACCTTTATCCGG TCGGC  TCGG   T CG                                                                                                                                                                                                                                                                                                                                   
                          C     --    --- T  AAACGCACCGGATCCGGACTGGACGTAAAAAAAAAGCACCGGGTTCGGACCGGACACCGGATAGTTATCCGGTTTAAAATACCGAACCGGACCGGAAAAGATCCCGGACCGGACCGGATGTTCGGAAGAATTTTTGGATAAATTGTCTGTTAAAATAGTTTTCTTCCAGTAATCCGAACGCCCGATTATTCGGAAAATATATAGTAACGTGAAAGAAAAGTTTATTTTTTTGGACATAGTAACATAAAGTTTTTGGTTTGGATATAGTAACCTCCTCTCCACCTGAACCGTCGCCATCTAGCCATCACCGCCGACCGACGTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930319

ATTGTAGTTAGGGGTGGAAATAGGCCAGCCGGCTCGTCAGGGGCCTATGACTCGGCTCGTCTGAGGCTCGGCCCGACCTGGCTCGTTTATTAAAAAGGTCAGGCTTAGGCTTTTTAAAAGGTCTATTTAACTAAAAAGGTCAGGCCCAAACAATTTAAAAAGCCTATTTAGCCTGATAGGCCGGCCTACTTATATATTGTTTTTATTAATAATATAAATAAATATAATTTAATTATATATAATATAATTTTTTTTAAACTGATGTATACTTTAGTATAAAAGAAAACCCTAAGTCTCTACCCTAACCTAGATTAGAAACGTTCCAAACATATTCAGCATAACACATCCTCAACCACACAGGACGCAGGCTGCAGCCAGCCGCCACTACCGATCTACCGCTGCCAAGTCCACCTCTCCTCCAATGATATAGGTTTGGTTTTTGAAATACAATGATACAGGTTTTTTTATTTGAAAAGAAAGTGCAATGATATATAAAAGGCTTATTAGCCCGCAAGCCTAATGACCTTCTTTTGATAAAATTGTCTGTTAAATAGGTTTTTAAGAAGGCTTGTAGGCCAGGCCAGGCCCTAGAAAAGGCCAGGCCAAGCCATAAAATTTGGCCTATTGATAGGCCACAGGCCAGGCTTGGGCCACGAAAAAAAAATGCAGGTCAGGCCTAGGCCACGCAAAGCTTGGCTCGGCTCGGCCTATTTCCACCCCTAATTGTAGT

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