Plant MITE

SE1910329

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4372
Lotus japonicus
SE1910329
Tc1/Mariner
St20
CM0034:242215-242506
TA
TACTCCCTCCGTTATAGAAAGTTTATAGTTTAAGGTTGTGGCACAAAGAGT

Secondary structure and sequence

TSD TIR

5'

3'

         C   A          A      A    --T  GG  ------    G   ----AAGAAA    ----  ATTGA  GTACAATTTGACTAAATTGCCCTTATTTATGGTGTTCTATTTCTAAGGATAGTGGTAACTATATCAAGAA
TACTCCCTC GTT TAGAAAGTTT TAGTTT AGGT   GT  CA      CAAA AGT          GCAA    TT     TA                                                                      
||||||||| ||| |||||||||| |||||| ||||   ||  ||      |||| |||          ||||    ||     ||                                                                      T
ATGAGGGAG CAA GTCTTTCAAA ATCAAA TCCA   TA  GT      GTTT TCA          TCCT    TT     AC                                                                      
         A   G          C      A    TGC  AA  TATAAG    A   AACAACAAAA    ACAG  -----  GTAAAAAAAGGGTAAAAAAGGAAGATATTGGAATAAATAAATTAAAAGAGATAGGTGATACAAATAACGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910329

TACTCCCTCCGTTATAGAAAGTTTATAGTTTAAGGTTGTGGCACAAAGAGTAAGAAAGCAATTATTGATAGTACAATTTGACTAAATTGCCCTTATTTATGGTGTTCTATTTCTAAGGATAGTGGTAACTATATCAAGAATTGCAATAAACATAGTGGATAGAGAAAATTAAATAAATAAGGTTATAGAAGGAAAAAATGGGAAAAAAATGCATTGACATCCTAAAACAACAAACTATTTGGAATATTGAAATCGTACCTAAAACTACAAACTTTCTGGAACAGAGGGAGTA

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