Plant MITE

SE1950335

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4378
Lotus japonicus
SE1950335
PIF/harbinger
To2
CM0690:297462-297748
TAA
AGGCCCAGTTTGGAAAAGCTTATTTGAGC

Secondary structure and sequence

TSD TIR

5'

3'

TA      A       ---AA      T      TTATCTGACA            ATG   GTGTTTGGGAGAGCTTATGCAAACAGCTTATGGTCTGCCATAAGCTATTTTCAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAA
  AGGCCC GTTTGGA     AGCTTA TTGAGC          GCATAAGCTCTT   TCA                                                                                         
  |||||| |||||||     |||||| ||||||          ||||||||||||   |||                                                                                         A
  TCCGGG CAAACCT     TCGAAT AATTCG          CGAATACCAGTA   TTC                                                                                         
AA      G       ATTTG      T      ----------            ---   GCGAATACTGTATTCGCGAATAAGTATTCGATAAAATTTTTTAAATAACTTTATTTAATTTTTATTCGACACATATTCGTATTCGACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1950335

TAAGGCCCAGTTTGGAAAAGCTTATTTGAGCTTATCTGACAGCATAAGCTCTTATGTCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGTCTGCCATAAGCTATTTTCAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAACAGCTTATGCTTATACACAGCTTATTTTTAATTTATTTCAATAAATTTTTTAAAATAGCTTATGAATAAGCGCTTATGTCATAAGCGCTTATGACCATAAGCGCTTAATTAAGCTGTTTATCCAAACGGGGCCTAA

Copy Cancel