SE1950338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4381
  • Lotus japonicus
  • SE1950338
  • PIF/harbinger
  • To2
  • LjSGA_030450:996-1282
  • TAA
  • AGGCCCCGTTTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C       TAAACAACTTAATT    ACTTATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTTTTAAAAATTTATTGACATAAATTAAAAATAAGCTGTGTATAAGCATAAGCTGTTTTTCATAAGCT
  AGGCCC GTTTGGA              AAGC                                                                                                                   
  |||||| |||||||              ||||                                                                                                                   A
  TCCGGG CAAACCT              TCGA                                                                                                                   
AA      T       ------------TC    ATAAACTCGAATAGACTGTCGTATTCGAGAATACGGTCACAAACCCTCTCGAATACGTTTGTCGAATACCAGACGGTATTCGATAAAAGTCGAATAAAAGTATTCGATGAGTCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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