Plant MITE

SE1920340

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4383
Lotus japonicus
SE1920340
Mutator
M58
LjT07B02:16969-17289
AATCAATTT
TTCAATAATGATTCATGAACACAAAAAGGGAAAACATTAAAAAACACTCATTTTC

Secondary structure and sequence

TSD TIR

5'

3'

AATCAAT                       -A  AG   -AAA   T                 CTTTG      C     C    - T         TAATG  A TT    G    ATTGAAACACCCGCAAAGCTATTTACTGCAAATTTTCTTTGAAAATTTT
       TTCAATAATGATTCATGAACACA  AA  GGA    CAT AAAAAACACTCATTTTC     GATTTT CTTCG AATT C TGTGGATTT     AG A  TAGC GCGG                                                 
       |||||||||||||||||||||||  ||  |||    ||| |||||||||||||||||     |||||| ||||| |||| | |||||||||     || |  |||| ||||                                                  
       AAGTTATTATTAAGTACTTGTGT  TT  CCT    GTA TTTTTTGTGGGTAAAAG     CTAAAA GAAGT TTAA G ACGCCTAAA     CC G  AAGT TTTT                                                 
TTTAACT                       AG  GA   GTAC   T                 AACGA      A     -    T C         -----  - --    -    ATAAGCGTCCTTTTAAAACATTCATTTTGGCGTCCTTTCAAAACTAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920340

AATCAATTTCAATAATGATTCATGAACACAAAAAGGGAAAACATTAAAAAACACTCATTTTCCTTTGGATTTTCCTTCGCAATTCTTGTGGATTTTAATGAGAATTTAGCGGCGGATTGAAACACCCGCAAAGCTATTTACTGCAAATTTTCTTTGAAAATTTTTAAATCAAAACTTTCCTGCGGTTTTACTTACAAAATTTTCCTGCGAATATTTTTGAAGCCAAATCCGCACGTAATTTGAAGAAAAATCAGCAAGAAAATGGGTGTTTTTTTATGCATGTCCAGTTGATGTGTTCATGAATTATTATTGAATCAATTT

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