Plant MITE

SE1930344

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4387
Lotus japonicus
SE1930344
hAT
Hat20
CM0021:1277860-1278056
GTTGAAAC
GTTGAAACCAGGGTTGTTAATGGC

Secondary structure and sequence

TSD TIR

5'

3'

   GA       G           G    GCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCGGAAAATAGCG
GTT  AACCAGG TTGTTAATGGC GATA                                                                      
|||  ||||||| ||||||||||| ||||                                                                       
CAA  TTGGTCC AACAATTATCG CGCG                                                                      
   AG       G           -    ATATCGCGCGTTATCGGATATCGCATCGCCGGACCCCCAAGTGGCGATGAGGTGATAAGTGGCGATAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930344

GTTGAAACCAGGGTTGTTAATGGCGGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCGGAAAATAGCGCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCCAGGCCGCTACGCTATAGGCTATTGCGCGCTATAGCGCGCTATTAACAAGCCTGGTTGAAAC

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