Plant MITE

SE1920345

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4388
Lotus japonicus
SE1920345
Mutator
M59
CM0227:28251-28561
TAATGAATA
TAGGGTAAATTGCAATAACCTCCCTTAAAGTTTATTATTGTTGCACTGATCTCCCCTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TAATGAA     T      CAA AA        AAA     T                         TTATTT    ---  ACGTACACTAACCACCCTTATTCCATTTGAAACATTGCACTAACCTCCCTTGAGGTTTATTTTTATTGCACTGGCCT
       TAGGG AAATTG   T  CCTCCCTT   GTTTA TATTGTTGCACTGATCTCCCCTTTA      AATA   AG                                                                             
       ||||| ||||||   |  ||||||||   ||||| |||||||||||||||||||||||||      ||||   ||                                                                             C
       ATCCC TTTAAC   A  GGAGGGAA   CAAAT GTAATAACGTGACTGGAGGGGAGAT      AAAC   TA                                                                             
ATAAGTA     C      ATG GC        CTC     T                         -----C    GTT  ACGTAATTGTAGGGGAGGAAGTATATAGTAAAACTTATTATCTTCCCACATAACCCGATATTACTATTTAAAATGCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920345

TAATGAATAGGGTAAATTGCAATAACCTCCCTTAAAGTTTATTATTGTTGCACTGATCTCCCCTTTATTATTTAATAAGACGTACACTAACCACCCTTATTCCATTTGAAACATTGCACTAACCTCCCTTGAGGTTTATTTTTATTGCACTGGCCTCCCGTAAAATTTATCATTATAGCCCAATACACCCTTCTATTATTCAAAATGATATATGAAGGAGGGGATGTTAATGCAATTTGCAAACTAGAGGGGAGGTCAGTGCAATAATGTTAAACCTCAAGGGAGGCGAGTACAATTTCCCCTAATGAATA

Copy Cancel