Plant MITE

SE1920348

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4391
Lotus japonicus
SE1920348
Mutator
M5
LjT43G14:33625-33824
TTGTTGTAT
GAGATTAATTTCTATGTACTATAGTTGTAAATAAGTTTTACACAATCATTCAATCACAACCCTCCATTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

TTGTTGTAT            T       -A    T     T            ATC   C       A  C        G GAGCTCATAATTA         TTAA
         GAGATTAATTTC ATGTACT  TAGT GTAAA AAGTTTTACACA   ATT AATCACA CC TCCATTTT T             ATTTTGAAT    
         |||||||||||| |||||||  |||| ||||| ||||||||||||   ||| ||||||| || |||||||| |             |||||||||     
         CTCTAATTAAAG TACGTGA  ATCA TATTT TTCAAAATGTGT   TAA TTAGTGT GG AGGTAAAG A             TAAAATTTA    
TATGTTGTT            T       CC    -     -            CAA   A       A  A        G -------------         TAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920348

TTGTTGTATGAGATTAATTTCTATGTACTATAGTTGTAAATAAGTTTTACACAATCATTCAATCACAACCCTCCATTTTGTGAGCTCATAATTAATTTTGAATTTAATGATATTTAAAATAGGAAATGGAAGGATGTGATTAAATAACTGTGTAAAACTTTTTATACTACCAGTGCATTGAAATTAATCTCTTGTTGTAT

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