Plant MITE

SE1950352

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4395
Lotus japonicus
SE1950352
PIF/harbinger
To10
CM2079:228265-228661
TAA
AGAGCATCTCCAATGCTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA                T  TTCTT   -            GCATTATTCATGTGGGCCCGTATTGCCACATGTGTTTAAGCAACTCTCAAACAATTTTGCTCCAACCATGAGTTCTTAGTTCTTACCACTATTCATTTAGTCCCACCAACCACATTATTTATACTTTTTATTTTCATAAAGTAATAAAACAAAACTCAT
  AGAGCATCTCCAATGC AG     ATT TCTTAGTTCTTA                                                                                                                                                               
  |||||||||||||||| ||     ||| ||||||||||||                                                                                                                                                               A
  TCTCGTAGAGGTTACG TC     CAA AATCAAGAATTA                                                                                                                                                               
AA                T  -----   A            TACCTTAATTCTTGATTCTTGAAATGGTAACCTCCCCGACTGTACCTGAGGAATCAAGAATTTTTATTCTTGAGTCAAGAATATATTCCTCAAAACGAAAAACTCAAGAATCAAATTTTATAATTAATAAAAAGAGAATATGTTTAATGAAATAATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1950352

TAAGAGCATCTCCAATGCTAGTTCTTATTTCTTAGTTCTTAGCATTATTCATGTGGGCCCGTATTGCCACATGTGTTTAAGCAACTCTCAAACAATTTTGCTCCAACCATGAGTTCTTAGTTCTTACCACTATTCATTTAGTCCCACCAACCACATTATTTATACTTTTTATTTTCATAAAGTAATAAAACAAAACTCATAAAGTAATAAAGTAATTTGTATAAGAGAAAAATAATTAATATTTTAAACTAAGAACTCAAAAAGCAAAACTCCTTATATAAGAACTGAGTTCTTATTTTTAAGAACTAAGGAGTCCATGTCAGCCCCTCCAATGGTAAAGTTCTTAGTTCTTAATTCCATATTAAGAACTAAAAACCTTGCATTGGAGATGCTCTAA

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