Plant MITE

SE1910354

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4397
Lotus japonicus
SE1910354
Tc1/Mariner
St3
CM0295:801776-801925
TA
TACACCCTCCGGTCACTATTATAAGCAAAAGTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

                                    TTTG                            AC   TT
TACACCCTCCGGTCACTATTATAAGCAAAAGTTAGT    TAGGTTCATTCAATAAATGATGTATGTG  CAT  
||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||  |||   
ATGTGGGAGGCCAGTGATAATATTCGTTTTCAATTA    ATCTAAGTAAGTTATTTACTACATACAT  GTA  
                                    TAAA                            CA   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910354

TACACCCTCCGGTCACTATTATAAGCAAAAGTTAGTTTTGTAGGTTCATTCAATAAATGATGTATGTGACCATTTTAATGACTACATACATCATTTATTGAATGAATCTAAAATATTAACTTTTGCTTATAATAGTGACCGGAGGGTGTA

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