Plant MITE

SE1920357

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4400
Lotus japonicus
SE1920357
Mutator
M3
CM0002:69330-69541
TTATTTAAT
TTATTTAATGAGTTTAATGGATATGCACTGTCAGTGTAAAACTGTTTTACAC

Secondary structure and sequence

TSD TIR

5'

3'

    TT   T           A                   A  -GT       TGACAA     CACAACA        A   G     ATA    TCATCTTAAAT
 TTA  TAA GAGTTTAATGG TATGCACTGTCAGTGTAAA CT   TTTACAC      CCAAT       TGCCATAT AGT AAATA   TCTT           
 |||  ||| ||||||||||| ||||||||||||||||||| ||   |||||||      |||||       |||||||| ||| |||||   ||||           T
 AAT  ATT CTTAAATTACC ATATGTGACAGTCACATTT GA   AAATGTG      GGTTA       GCGGTGTA TCG TTTAT   AGAA           
T   TT   -           C                   -  AAC       TCAGCG     ACTTAAG        G   -     ATA    CAAAATTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920357

TTATTTAATGAGTTTAATGGATATGCACTGTCAGTGTAAAACTGTTTTACACTGACAACCAATCACAACATGCCATATAAGTGAAATAATATCTTTCATCTTAAATTTTAATTAAAACAAGAATATATTTGCTGATGTGGCGGAATTCAATTGGGCGACTGTGTAAACAAAGTTTACACTGACAGTGTATACCCATTAAATTCTTATTTAAT

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