SE1920358

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4401
  • Lotus japonicus
  • SE1920358
  • Mutator
  • M25
  • CM0001:49245-49527
  • AAATAAAAA
  • GGCTAAAAAGCATTTTTGGCCCCTGATGTTTCAAGTTTGTGCAAATTCTGCTCCTACTCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCATCGTCTACCCCTCATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATAAAAA                               C           A            C                                                           A   TTTCAAAC  TGCA
         GGCTAAAAAGCATTTTTGGCCCCTGATGTTT AAGTTTGTGCA ATTCTGCTCCTA TCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCATCGTCTACCCCTC TGT        AG    
         ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        ||     
         CCGATTTTTCGTAAAAACCGGGGACTACAAA TTCAAACACGT TAAGACGGGGAT AGATAAAAACAGCTACAAAGGTGGGGAGTACAAAAGTTTGTCACGTGGCAGATGGGGAG GCA        TC    
AAAAATAAA                               A           G            -                                                           -   -CTCCCCA  TGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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