SE1930361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4404
  • Lotus japonicus
  • SE1930361
  • hAT
  • Hat21
  • LjSGA_087569:454-667
  • CTCACCGC
  • GCCAGTGGCGGATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
 CTCACC  C         T   -      GGCTTGGTGGGTCCATTGCCCTAGCTCAAACAAAAAAAAGAAAATATTTCTTTGGATCAAGTAAGTTTTTGGGCAAAA
       GC AGTGGCGGA CCA CCACCA                                                                              
       || ||||||||| ||| ||||||                                                                              A
       CG TCACCGCCT GGT TTTTAG                                                                              
CGACACT  -         T   C      ACCCTTCGACCCCGTTTAAATAATAATTCAGGGGTTTAAAACAGAATAGAACATTTAAAACGGAAAAAGAGAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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