SE1920363

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4406
  • Lotus japonicus
  • SE1920363
  • Mutator
  • M17
  • CM0013:993172-993358
  • GTTTCTTTT
  • GAGTAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTCTTTT        ATACATACACACC      TCTCTTC   C   T        ATTTTTCTTCCTATCTCTCTCTGCATTTCC   CACATCACATATCATTCATTTCTCT
         GAGTAATG             TCACTT       CAT TCA TTCCACCT                              TGT                         
         ||||||||             ||||||       ||| ||| ||||||||                              |||                          
         CTTATTAC             AGTGAA       GTA GGT AAGGTGGA                              GGT                         
TTTTCTTTG        ------------A      -----TT   T   T        ------------------------------   GGAACCCTCTAATCCATCTTTACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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