Plant MITE

SE1910365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4408
Lotus japonicus
SE1910365
Tc1/Mariner
St7
CM1864:203849-204117
TA
TACTCCCTCCGTTCCTATTTAACTGTCCAGGAAGAGAAGAA

Secondary structure and sequence

TSD TIR

5'

3'

                AT        C  ---G           ACAC    A      ---------A   C   -T --  CTTGTTACTTTTCATAAAAGTATTATTTGATTTCCTATTTCACCCTTTAAAATGTATATTAT
TACTCCCTCCGTTCCT  TTAACTGT CA    GAAGAGAAGAA    ACAT TTAAGG          GTG AAT  A  AT                                                              
||||||||||||||||  |||||||| ||    |||||||||||    |||| ||||||          ||| |||  |  ||                                                               
ATGAGGGAGGCAAGGA  AATTGACA GT    CTTCTTTTTTT    TAAC AAGGAT          GTG AAT  C  AG                                                              
                AT        A  AAAA           ----    -      ATATAGACAG   -   CT AA  TTCTCTCGTAATTTACTACAAAAAGGTTCTTTACAAGAACATCCTTGTTATTTACTCCTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910365

TACTCCCTCCGTTCCTATTTAACTGTCCAGGAAGAGAAGAAACACACATATTAAGGAGTGCAATTAATCTTGTTACTTTTCATAAAAGTATTATTTGATTTCCTATTTCACCCTTTAAAATGTATATTATATTTCCTCATTTATTGTTCCTACAAGAACATTTCTTGGAAAAACATCATTTAATGCTCTCTTGAAACTCTAAGTGGACAGATATATAGGAACAATTTTTTTTCTTCAAAATGAACAGTTAATAAGGAACGGAGGGAGTA

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